MGFR: Marker Gene Finder in RNA-seq data
نویسنده
چکیده
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منابع مشابه
GIIRA - RNA-Seq driven gene finding incorporating ambiguous reads
MOTIVATION The reliable identification of genes is a major challenge in genome research, as further analysis depends on the correctness of this initial step. With high-throughput RNA-Seq data reflecting currently expressed genes, a particularly meaningful source of information has become commonly available for gene finding. However, practical application in automated gene identification is stil...
متن کاملRNA-seq driven gene identification
The reliable identification of genes is a challenging and crucial part of genome research. Various methods aiming at accurate predictions have evolved that predict genes ab initio on reference sequences or evidence based with help of additional information. With high-throughput RNA-Seq data reflecting currently expressed genes, a particularly meaningful source of information has become commonly...
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This study was performed to determine the digital expression profile of different genes expressed in Holstein and Cholistani breeds as well as to evaluate the performance of predicted proteins derived from differentially expressed genes between these two breeds using RNA-Seq data. For this purpose, the whole mRNA sequence for a blood sample of American Holstein and Pakistani Cholistani cattle p...
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Background: Mammalian preimplantation development is a complex process involving dramatic changes in the transcriptional architecture. However, it is still unclear about the crucial transcriptional network and key hub genes that regulate the proceeding of preimplantation embryos. Materials and Methods: Through single-cell RNAsequencing (RNA-seq) of both human and mouse preimplantation embryos, ...
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Objective(s): High-glucose (HG) stress, a mimic of diabetes mellitus (DM) in culture cells, alters expression of a large number of genes including Wnt and NF-κB signaling-related genes; however, the role of Wnt signaling during HG-mediated fibroblast damage and the relationship between Wnt and NF-κB signaling have not been understood. In this study, we aimed to investigate the ffects of Wnt sig...
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